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21.9: new id scheme fixes and test updates

Nicholas Styles requested to merge nstyles/athena:21.9-newIDSchemeFixes into 21.9

Fixing some issues seen when running reconstruction on the new planned geometry descriptions:

  • XMLReaderFlags.InnerDiskIndices was incorrect. NB that in future (i.e. master this needs to be set somewhere else than in python, since it should be bound to the geometry tag.

  • Fix an issue with running using local IdDictionary files to override the ITk part. the Muons system doesn't have a sensible default defined, so this need to be set explicitly... again, needs a better fix in future from the Muon side.

  • Update the RunUpgradeTests.py script with a reco_tf command demonstrating how this should be run for the new geometry versions.

FYI @ncalace @tstreble @npetters @goblirsc @asalzbur @czhou @nova @hhayward

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