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New configuration style for InDetRecTools

Created configuration needed to run

python -m MuonCombinedConfig.MuonCombinedReconstructionConfig --run

Edits were mostly on InDetRecToolsConfig.py and MuonCombinedReconstructionConfig.py and a few Detector flags added.

Will not affect anything else as the new configuration style is separate from the old config.

Still fails at runtime (in master), not sure if this is due to the configuration.

Fixes InDetConfigFlags.py, which had a copy-paste error where most flags were assigned the wrong value.

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