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AthenaExamples: cmake configuration and package cleanup

Frank Winklmeier requested to merge fwinkl/athena:cmake_examples into master

Some housekeeping for the packages under Control/AthenaExamples

  • remove atlas_depends_on_subdirs cmake statements
  • update link dependencies
  • enable flake8 checking where relevant
  • remove obsolete files
  • remove two empty packages
  • move private header files to src directory where relevant
  • replace CLHEP/SystemOfUnits.h with the one from GaudiKernel

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