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L1Decoder configuration fixes

Stewart Martin-Haugh requested to merge smh/athena:L1Decoder_fixes into master

Fix two cases observed as unit test failures in most recent nightly:

1)need to adjust direct import of L1Decoder in TrigInDetConfig (cc @sutt)

2)L1Decoder in new configuration ignored muon/calo being off. Add new ConfigFlags for this.

Cheers,

Stewart

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