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Fixes to allow the low pt analyses to be run in the new boilerplate free code

Mark Sutton requested to merge sutt/athena:fultility into master

Many of the tests, have very similar configurations, and the code is all duplicated.

These changes factorise the common code better, and allows different analyses for the low pt chains in the common configuartion baseclass.

Renames the output directory for the offline analyses also to reduce the need for duplicated flags.

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