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Use menu alignment in newJO

Tomasz Bold requested to merge tbold/athena:use-menu-alignment-in-newJO into master

This MR is an attempt to synchronise newJO and mainline CF creation. The code was revised to use the menu alignment tools. It was also restructured to be several smaller functions. Related to: ATR-22556

There are now entirely empty steps because in muons&electrons we were doing the alignment by hand so far. Followup MR is execpted. Related to https://its.cern.ch/jira/browse/ATR-19539

Edited by Tomasz Bold

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