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AthenaConfiguration+AthenaCommon: Fix for reading old configuration.

Scott Snyder requested to merge ssnyder/athena:oldconf.AthenaConfiguration-20210326 into master

The old configuration writes three objects to the pickle.

The second object needs to override the first for proper handling of a few core services like JO svc.

The third relates to python configurables. Ignoring this for now.

See also 955f5d3a.

Also update reference file in AthenaCommon.

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