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Fixes to cut bookkeeping in master

Tadej Novak requested to merge tadej/athena:cbk-fixes into master

This MR contains various fixes with cut bookkeeping in master:

  • Rename default BookkeeperTool instance to 'BookkeeperTool' (helps with MP).
  • Do not flush the in-memory cache on file transition, only on MetaDataStop.
  • Make sure input systematic variations are also copied over.
  • Make sure IncompleteCutBookkeepers are always written out for nominal variation, even if empty (simplifies analysis usage).
  • Tests default to two input files to test file transitions.
  • Add a test with shared writer.
  • Fix BookkeeperDumperTool to also print sum of squares of weights.

After this MR I get the same output running serial, with MT or MP with shared writer on multiple files.

/cc @tsulaia (for general metadata), @lheinric + @alister (for AMG), @jcatmore (for derivations), @gemmeren + @amete (for shared writer)

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