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AthenaConfiguration: Don't assume DQMonFlagsCont is present.

Scott Snyder requested to merge ssnyder/athena:config.AthenaConfiguration-20210924 into master

In OldFlags2NewFlags, don't die if DQMonFlagsCont hasn't been set up. Fixes crash seen in the RecExCommon myTopOptions test.

Also increase the timeout for a test that was seen to be timing out in a debug build.

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