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TrigL2MuonSA updates to new JO config

Savanna Shaw requested to merge sshaw/athena:l2muonsa-newjo into master

Updating the endcap LUTs used in the new JO configuration to be the same as in the standard config. Also removing the use of MuonGeometry flags in favour of the flags.Detector flags.

cc @yoyamagu for info.

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