Migrate pflow from ESD reco workflows to only use new job config framework

This MR deprecates job options which run pflow reco workflows from ESD using RecExCommon (which is broken and tricky to fix), in favour of usage of the new style job options. Calibration hit decorations new style configs are updated to comply with latest requirements. I also reorganised the pflow run 3 style config a bit to properly separate config modules and code to setup specific workflows. The remap config is updated to also rename CaloCalTopoClusters from the input. A new test is added that runs pflow + calo + calibration hit decoration reco, in addition to a test that only runs calibration decoration reco.