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[TriggerJobOpts] Fix the placement of HLTPreSeq

Rafal Bielski requested to merge rbielski/athena:fix-hltpreseq into 22.0

Move the creation of the HLTPreSeq sequence in the HLTTop one after the ConfigFlags and Modifiers are fully initialised. Up to now, the code was never executed because the enableCostMonitoring flag was only set later (in a Modifier).

Hopefully fixes ATR-25779

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