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Solving circular dependency and clean up

Sergi Rodriguez Bosca requested to merge serodrig/athena:FixWarning into 23.0

This MR is meant to solve one circular dependency found, and reported here: ATR-22275

To solve the circular dependency, I have disentangled the jTower creation from the simulation. This will allow a future MR where we will be able to send jFEX input data as input of the simulation.

Additionally some clean up have been made.

Edited by Sergi Rodriguez Bosca

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