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Draft: Use parser from AthOptionsParser to set ConfigFlags

Stewart Martin-Haugh requested to merge smh/athena:argparse_for_CA into main

I tried to use --profile-python in a CA job and discovered the option does not exist. This MR uses the same options in AthOptionsParser and in AthConfigFlags.

I haven't resolved what it should do for interactive running: it seems like we have two options for CA ('init', 'run') but only init is supported for non-CA athena. So this is still WIP.

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