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update_ci_reference_files.py: Write info.txt file only after target directory exists

Walter Lampl requested to merge wlampl/athena:ciUpdateFix1 into main

While using @emoyse's update_ci_reference_files.py in live-mode, I found that it tries to write the info.txt file before the directory on EOS was mkdir'ed. This MR reshuffles the order of commands to fix this issue.

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