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Add a setupLoggingLevels call to runHLT.py

Tim Martin requested to merge tamartin-main-patch-54178 into main

This mirrors the offline call at https://acode-browser.usatlas.bnl.gov/lxr/source/athena/Reconstruction/RecJobTransforms/python/RAWtoALL_Skeleton.py#0261

To enable use of flags.Exec.XXXMessageComponents flags also in the HLT.

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