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Support specially etcut chains in navigation conversion

Tomasz Bold requested to merge tbold/athena:ATR-29111 into 24.0

This MR adds special hooks in the Run2 navigation conversion to handle etut chains in expected way (that is non-standard way). In addition, the tester code is running the problematic, simplified checks only for specific chains and thus fixes errors mentioned here: ATR-29111

Also relevant for: ATR-28358

Tagging @tamartin @wprzygod

Edited by Tomasz Bold

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