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Pixel - Adding flag to reco tracks when undefined state & calib updates

Sergi Rodriguez Boscarequested to merge
serodrig/athena:26Nov2025 into 24.0

This merge request is meant to solve the problem when the state of the detector in UNDEFINED when running the HV scan.

The only available states to reconstruct tracks were READY and OK, now using the the flag flags.InDet.useHVActiveStates = True in the --preExec can include the UNDEFINED state, a situation that happens with the HV increases above the threshold.

Additionally I have added in the Pixel calibration the saving of the long + ganged pixels when m_savefile is true

FYI @battagl

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