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Python Installation Fix, 1.0 branch (2018.04.20.)

Attila Krasznahorkay requested to merge akraszna/atlasexternals:PythonInstallFix-1.0-20180420 into 1.0

This is to fix the issue discussed in:

https://gitlab.kitware.com/cmake/cmake/issues/17926

Turns out that one needs to be more explicit with the dependency setup for add_custom_command(...), to avoid situations where the name of a file in the source tree would look like a file/link that is created during the build in the binary/build directory.

This should solve the issues reported by @chunhui for the ART package. (cc-ing @tcuhadar, as she'll be interested in this as well...) I tested locally that the ART package gets reasonable makefiles made after this change.

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