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Matts pipeline changes

Matthew William Kenzie requested to merge matts-pipeline-changes into master

Several updates to the pipeline to that it synchs between latest ganga output tuples (see recent updates in NTupleProduction e.g. MRs !17 (merged) !18 (merged) !19 (merged) )

  • Now run data and simulation in one overall snakefile (although this probably should be modularised)
  • Have added several new exectuables to help things (but actually still make use predominantly of the old ones)
  • I would in future recommend we just use ApplyGenericSelection.py as it allows an arbitary directory structure with multiple directories and it allows for multiple selections and allows for different input and output branches. This is actually only used at the moment for applying the mass cuts at the end
  • This works on all of 2016 (still to be tested properly for the other years)
  • The only thing really remaining is to properly calculate an efficiency for each MC sample

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