Finish digi-merge job

Control/CalypsoExample/Digitization/scripts/submit_faserMDC_digi.sh

@@ -2,7 +2,7 @@
 # Used with a condor file to submit to vanilla universe
 #
 # Usage:
-# submit_faserMDC_digi.sh filepath [release_directory] [working_directory] 
+# submit_faserMDC_digi.sh filepath [release_directory] [working_directory]
 # 
 # filepath - full file name (with path)
 # release_directory - optional path to release install directory (default pwd)

Control/CalypsoExample/Digitization/scripts/submit_faserMDC_digi_merge.sh

+#!/bin/bash
+# Used with a condor file to submit to vanilla universe
+#
+# Usage:
+# submit_faserMDC_digi_merge.sh dirpath slice nfiles [release_directory] [working_directory] 
+# 
+# dirpath - full directory path to HITS files
+# slice - ordinal output file number
+# nfiles - number of HITS files to process per slice
+# release_directory - optional path to release install directory (default pwd)
+# working_directory - optional path to output directory location (default pwd)
+#
+# The release directory must already be set up 
+# (so an unqualified asetup can set up the release properly)
+#
+# Script will use git describe to find the release tag.  
+# If this matches sim/s???? or digi/d???? it will be passed to the job
+#
+#----------------------------------------
+# Keep track of time
+SECONDS=0
+#
+# Parse command-line options
+dir_path=${1}
+slice=${2}
+nfiles=${3}
+release_directory=${4}
+working_directory=${5}
+#
+# Set defaults if arguments aren't provided
+if [ -z "$dir_path" ]
+then
+  echo "No directory specified!"
+  echo "Usage: submit_faserMDC_digi_merge.sh directory slice nfiles [release dir] [output dir]"
+  exit 1
+fi
+#
+if [ -z "$slice" ]
+then
+  echo "Slice number not specified!"
+  echo "Usage: submit_faserMDC_digi_merge.sh directory slice nfiles [release dir] [output dir]"
+  exit 1
+fi
+#
+if [ -z "$nfiles" ]
+then
+  echo "Files per slice not specified!"
+  echo "Usage: submit_faserMDC_digi_merge.sh directory slice nfiles [release dir] [output dir]"
+  exit 1
+fi
+#
+if [ -z "$release_directory" ]
+then
+  release_directory=`pwd`
+fi
+#
+if [ -z "$working_directory" ]
+then
+  working_directory=`pwd`
+fi
+#
+starting_directory=`pwd`
+#
+# Now extract the run number and file stem
+#
+# First, get an example filename
+file_name=`ls -1 $dir_path | head -1`
+# 
+# Now split based on '.' to get stem
+defaultIFS=$IFS
+IFS='.'
+read file_stem ext <<< "$file_name"
+#
+# Finally extract the run number
+IFS='-'
+# Read the split words into an array based on delimiter
+read faser short run_number segment <<< "$file_stem"
+#
+# Set the IFS delimeter back or else echo doesn't work...
+IFS=$defaultIFS
+#
+# Make output directory if needed
+output_directory="$working_directory/$run_number"
+mkdir -p "$output_directory"
+#
+# Need to make up an output name
+file_stem="$faser-$short-$run_number-RDO-merge-$slice"
+#
+# This magic redirects everything in this script to our log file
+exec >& "$output_directory/$file_stem.log"
+echo `date` - $HOSTNAME
+echo "Directory: $dir_path"
+echo "Slice: $slice"
+echo "NFiles: $nfiles"
+echo "Release: $release_directory"
+echo "Output: $output_directory"
+echo "Starting: $starting_directory"
+echo "job: $file_stem"
+#
+# Set up the release (do this automatically)?
+export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase
+source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh 
+#
+# Try automatic
+# Always go back to the starting directory in case paths are relative
+cd "$starting_directory"
+cd "$release_directory"
+# asetup
+# source build/x8*/setup.sh
+#
+# Do this by hand
+asetup --input=calypso/asetup.faser Athena,22.0.49
+source build/x86*/setup.sh
+#
+#
+# Try to find a release tag
+cd calypso
+recotag=`git describe`
+if [[ "$recotag" == "reco/r"???? ]]; then
+  tag=`echo "$recotag" | cut -c 6-11`
+  echo "Found reco tag: $tag"
+fi
+if [[ "$recotag" == "digi/d"???? ]]; then
+  tag=`echo "$recotag" | cut -c 6-11`
+  echo "Found digi tag: $tag"
+fi
+if [[ "$recotag" == "sim/s"???? ]]; then
+  tag=`echo "$recotag" | cut -c 5-10`
+  echo "Found sim tag: $tag"
+fi
+#
+# Move to the run directory
+cd "$starting_directory"
+cd "$output_directory"
+#
+# Remove any previous directory if it exists
+#if [[ -e "$file_stem" ]]; then
+#    echo "Remove previous directory $file_stem"
+#    rm -rf "$file_stem"
+#fi
+#
+# Make run directory
+if [[ -e "$file_stem" ]]; then
+    echo "Directory $file_stem already exists"
+else
+    mkdir "$file_stem"
+fi
+cd "$file_stem"
+#
+# Run job
+if [[ -z "$tag" ]]; then
+    faserMDC_digi_merge.py --slice $slice --files $nfiles $dir_path
+else
+    faserMDC_digi_merge.py --slice $slice --files $nfiles --tag $tag $dir_path
+fi
+#
+# Print out ending time
+date
+echo "Job finished after $SECONDS seconds"