Add production scripts

Tracker/TrackerRecAlgs/NoisyStripFinder/CMakeLists.txt

@@ -17,5 +17,5 @@ atlas_add_component( NoisyStripFinder
 
 atlas_install_python_modules( python/*.py )
 
-atlas_install_scripts( share/*.py test/*.py )
+atlas_install_scripts( share/*.py share/*.sh )
 

Tracker/TrackerRecAlgs/NoisyStripFinder/share/submit_noisy_run.sh

+#!/bin/bash
+#
+# Used to submit noisy strip finding job to condor
+#
+# Usage:
+# submit_noisy_run.sh [options] file_path 
+#
+# Options:
+#   --
+#   --out - specify output file path location
+#   --log - specify output log file location
+#   --isMC - needed for MC reco
+#   --rel  <reldir> - specify release directory
+#   --work <sorkdir> - specify working directory
+#
+# file_path - path of one or more files to process
+#
+# The release directory must already be set up
+#
+#----------------------------------------
+function print_usage {
+  echo "Usage: submit_noisy_run.sh [options] file_path"
+  echo "  file_path is on or more input files (can use wildcards)"
+  echo "  Options: "
+  echo "    --isMC - specify Monte Carlo"
+  echo "    --rel <release_directory> - specify release directory"
+  echo "    --work <working_directory> - specify working directory"
+  echo "    --out <output_directory> - where to copy output when job is finished"
+  echo "    --log <log_directory> - where to copy log file (or output_directory)"
+}
+# Keep track of time
+SECONDS=0
+#
+# Parse command-line options
+hfile="NoisyStripFinder.root"
+while [ -n "$1" ]
+do 
+  case "$1" in
+      -h)
+	  print_usage
+	  exit 0;;
+
+      -l | --log)
+	  logdest="$2";
+	  shift;
+	  shift;; # Must eat 2 options here
+
+      -o | --out)
+	  outdest="$2";
+	  shift;
+	  shift;;
+
+      --isMC)
+	  ismc=1
+	  shift;;
+
+      --hist)
+	  hfile="$2";
+	  shift;
+	  shift;;
+
+      --rel)
+	  release_directory="$2";
+	  shift;
+	  shift;;
+
+      --work)
+	  working_directory="$2";
+	  shift;
+	  shift;;
+
+      --) # End of options
+	  shift; # Eat this
+	  break;; # And stop parsing
+
+    -*) 
+	  echo "Unknown option $1"
+	  shift;;
+
+    *) break;;  # Not an option, don't shift
+  esac
+done
+#
+# Parse command-line arguments
+file_path="${@:1}"
+#
+# Set defaults if arguments aren't provided
+if [ -z "$file_path" ]
+then
+  echo "No file_path specified!"
+  print_usage
+  exit 1
+fi
+#
+if [ -z "$release_directory" ]
+then
+  release_directory=`pwd`
+fi
+#
+if [ -z "$working_directory" ]
+then
+  working_directory=`pwd`
+fi
+#
+starting_directory=`pwd`
+#
+# Create the working directory
+mkdir -p "$working_directory"
+cd $working_directory
+#
+# This magic redirects everything in this script to the log file
+logfile="noisy_`date +%m%d-%H%M%S`.log"
+exec >& "$logfile"
+echo `date` - $HOSTNAME
+echo "Filepath: $file_path"
+echo "Release: $release_directory"
+echo "Output: $output_directory"
+echo "Starting: $starting_directory"
+#
+# Set up the release (do this automatically)?
+export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase
+source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh 
+#
+# Try automatic
+# Always go back to the starting directory in case paths are relative
+cd "$starting_directory"
+cd "$release_directory"
+asetup --input=calypso/asetup.faser Athena,22.0.49
+source run/setup.sh
+#
+# Move to the run directory
+cd $starting_directory
+cd $working_directory
+#
+if [[ -z "$ismc" ]]; then
+    mcstr=""
+else
+    mcstr="--isMC"
+fi
+#
+NoisyStripFinderJob.py --outfile=$hfile $file_path
+#
+# Print out ending time
+date
+echo "Job finished after $SECONDS seconds"
+# 
+# Copy output to EOS if desired
+export EOS_MGM_URL=root://eospublic.cern.ch
+#
+# Now copy output file
+if ! [ -z "$outdest" ]
+then
+    echo "Output directory:"
+    ls -l
+    echo "copy $hfile to $outdest"
+    if [[ $outdest == /eos/experiment/faser/* ]]; then
+	eos mkdir -p $outdest
+	# Keep this line from stopping script, so we might get a log file
+	# || true ensures script continues even if copy fails
+	eos cp $hfile $outdest/ || true
+    else
+	mkdir -p $outdest
+	cp $hfile $outdest/ || true
+    fi
+fi
+#
+# Copy log file second
+if ! [ -z "$logdest" ]
+then
+    echo "Output directory:"
+    ls -l
+    echo "copy $logfile to $logdest"
+    if [[ $logdest == /eos/experiment/faser/* ]]; then
+	eos mkdir -p $logdest
+	eos cp $logfile $logdest/$logfile
+    else
+	mkdir -p $logdest
+	cp $logfile $logdest/$logfile
+    fi
+elif ! [ -z "$outdest" ]
+then 
+    echo "copy $logfile to $outdest"
+    if [[ $logdest == /eos/experiment/faser/* ]]; then
+	eos cp $logfile $outdest/$logfile
+    else
+	cp $logfile $outdest/$logfile
+    fi
+fi