removing redundent variable setting

Run_Autopilot.sh

@@ -28,32 +28,29 @@ python3 telescope.py  --configuration cern_test --kcu 192.168.0.10 --offset $3 -
 #python3 poke_board.py --configuration modulev1 --etrocs 0 --kcu 192.168.0.10 --dark_mode --mask telescope_config_data/cern_test_2024-05-13-20-07-26/noise_width_module_106_etroc_2.yaml
 python3 poke_board.py --configuration modulev1 --etrocs 0 --kcu 192.168.0.10 --dark_mode
 
-
 if [ "$isTrack" = true ]
 then
     echo "You are starting a telescope run. Have you entered the run number $run_number on telescope? And turn BEAM ON now"
     read dummy
 fi  
-   
-
 
 for i in $(seq 1 $1)
 do
-    merging_dir="../ETROC2_Test_Stand/ScopeHandler/ScopeData/LecroyMerged/"
+    merging_dir="../ScopeHandler/ScopeData/LecroyMerged/"
     
     echo "___________________________________ "$i
-    run_number=`cat ../ETROC2_Test_Stand/ScopeHandler/Lecroy/Acquisition/next_run_number.txt`
+    run_number=`cat ../ScopeHandler/Lecroy/Acquisition/next_run_number.txt`
     echo "Run number: $run_number"
     # python3 poke_board.py --configuration modulev0b --etrocs 0  --kcu 192.168.0.10 --rb 1 --bitslip
-    # python3 poke_board.py --configuration modulev1 --etrocs 2  --kcu 192.168.0.10 --rb 2 --bitslip
-    # python3 poke_board.py --configuration modulev1 --etrocs 2  --kcu 192.168.0.10 --rb 1 --bitslip
-    ./autopilot.sh $n_events $offset
+    # python3 poke_board.py --configuration modulev1  --etrocs 2  --kcu 192.168.0.10 --rb 2 --bitslip
+    # python3 poke_board.py --configuration modulev1  --etrocs 2  --kcu 192.168.0.10 --rb 1 --bitslip
+    ./autopilot.sh $n_events $offset $run_number
     temperature=$(python3 poke_board.py --configuration modulev1 --etrocs 0 --rbs 0 --modules 0 --kcu 192.168.0.10 --temperature)
     sleep 7s
     kcu=`cat ./running_ETROC_acquisition.txt`
-    scope=`cat ../ETROC2_Test_Stand/ScopeHandler/Lecroy/Acquisition/running_acquisition.txt`
-    conversion=`cat ../ETROC2_Test_Stand/ScopeHandler/Lecroy/Conversion/ongoing_conversion.txt`
-    merging=`cat ../ETROC2_Test_Stand/ScopeHandler/Lecroy/Merging/ongoing_merging.txt`
+    scope=`cat ../ScopeHandler/Lecroy/Acquisition/running_acquisition.txt`
+    conversion=`cat ../ScopeHandler/Lecroy/Conversion/ongoing_conversion.txt`
+    merging=`cat ../ScopeHandler/Lecroy/Merging/ongoing_merging.txt`
     echo $kcu
     echo $scope
     echo $conversion
@@ -63,9 +60,9 @@ do
         echo "Waiting..."
         sleep 1s
         kcu=`cat ./running_ETROC_acquisition.txt`
-        scope=`cat ../ETROC2_Test_Stand/ScopeHandler/Lecroy/Acquisition/running_acquisition.txt`
-        conversion=`cat ../ETROC2_Test_Stand/ScopeHandler/Lecroy/Conversion/ongoing_conversion.txt`
-        merging=`cat ../ETROC2_Test_Stand/ScopeHandler/Lecroy/Merging/ongoing_merging.txt`
+        scope=`cat ../ScopeHandler/Lecroy/Acquisition/running_acquisition.txt`
+        conversion=`cat ../ScopeHandler/Lecroy/Conversion/ongoing_conversion.txt`
+        merging=`cat ../ScopeHandler/Lecroy/Merging/ongoing_merging.txt`
         echo $kcu
         echo $scope
         echo $conversion
@@ -73,7 +70,5 @@ do
     done
 
     test_successful=`test "$merging_dir/run_$run_number.root"`
-
     printf "$run_number,$bias_V,$offset,$n_events,$board_number,$bond,$energy,`date -u`,$isTrack,$powerMode,$temperature, $isMulti \n">>./run_log_SPS_May2024.csv
-
 done

autopilot.sh

-next_file_index="/home/etl/Test_Stand/ETROC2_Test_Stand/ScopeHandler/Lecroy/Acquisition/next_run_number.txt"
-index=`cat $next_file_index`
-echo $index
+echo $3
 
 #ipython3 telescope.py -- --kcu 192.168.0.10 --offset $2 --delay 32
 echo -n "True" > running_ETROC_acquisition.txt
-(python3 daq.py --l1a_rate 0 --ext_l1a --kcu 192.168.0.10 --rb 0 --run $index --lock "/home/etl/Test_Stand/ETROC2_Test_Stand/ScopeHandler/Lecroy/Acquisition/running_acquisition.txt") &
+(python3 daq.py --l1a_rate 0 --ext_l1a --kcu 192.168.0.10 --rb 0 --run $index --lock "/home/etl/Test_Stand/ETL_TestingDAQ/ScopeHandler/Lecroy/Acquisition/running_acquisition.txt") &
 (sleep 15
-python3 /home/etl/Test_Stand/ETROC2_Test_Stand/ScopeHandler/Lecroy/Acquisition/acquisition_wrapper.py --nevents $1)
-python3 data_dumper.py --input ${index} --rbs 0 --skip_trigger_check
+python3 /home/etl/Test_Stand/ETL_TestingDAQ/ScopeHandler/Lecroy/Acquisition/acquisition_wrapper.py --nevents $1)
+python3 data_dumper.py --input $3 --rbs 0 --skip_trigger_check
 # remember: 0,1,2
 
 #python3 root_dumper.py --input ${index} #_rb0 # Run in other shell with root configured
 echo -n "False" > running_ETROC_acquisition.txt
 echo -n "True" > merging.txt
-echo -n "True" > /home/etl/Test_Stand/ETROC2_Test_Stand/ScopeHandler/Lecroy/Acquisition/merging.txt
+echo -n "True" > /home/etl/Test_Stand/ETL_TestingDAQ/ScopeHandler/Lecroy/Acquisition/merging.txt