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Miscellaneous CRUZET fixes

Laurent Petre requested to merge bugfix/cruzet-misc into develop

Description

This MR implements various fixes of issues discovered during the CRUZET runs:

  • Stop at the first failed transaction dring the GBT phase scan
    • Speeds up significantly the scan without impacting its robustness: a bad phase is still bad and as many transactions as before are performed on a good phase
    • Prevents the RPC call to timeout when GBT are unstable/not locking
  • Hardware layout tree
    • Ignore hidden files and directories
    • Use only files ending with .yml or .yaml
  • Update the software mask after masking unstable VFAT
  • Small improvements in the backend board logging

Related Issue

How Has This Been Tested?

The GBT phase scan is successful (and much faster) on the GE1/1 integration setup.

Types of changes

  • Bug fix (non-breaking change which fixes an issue)
  • New feature (non-breaking change which adds functionality)
  • Breaking change (fix or feature that would cause existing functionality to change)

Checklist:

  • My code follows the code style of this project.
  • My change requires a change to the documentation.
  • I have updated the documentation accordingly.
  • I have read the CONTRIBUTING document.
  • I have added tests to cover my changes.
  • All new and existing tests passed.

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