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Draft: [Misc] Organise source code in app/ and lib/

Niels Alexander Buegelrequested to merge
1265-organise-source-code-in-app-and-lib into main

Description

This MR reorganises the code in app/ lib/ and tools/

Checklist

  • Documentation reflects the changes made.
  • Merge Request title is clear, concise, and suitable as a changelog entry. See our contributing docs

References

Closes #1265

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