submit_faser_reco.sh

#!/bin/bash
# Used with a condor file to submit to vanilla universe
#
# Usage:
# submit_faser_reco.sh file_path [release_directory] [working_directory]
# 
# file_path - full file name (with path)
# release_directory - optional path to release install directory (default pwd)
# working_directory - optional path to output directory location (default pwd)
#
# The release directory must already be set up 
# (so an unqualified asetup can set up the release properly)
#
# Script will use git describe to find the release tag.  
# If this matches reco/r???? it will be passed to the reco job
#
#----------------------------------------
#
# Parse command-line options
file_path=${1}
release_directory=${2}
working_directory=${3}
#
# Set defaults if arguments aren't provided
if [ -z "$file_path" ]
then
  echo "No file_path specified!"
  exit 1
fi
#
if [ -z "$release_directory" ]
then
  release_directory=`pwd`
fi
#
if [ -z "$working_directory" ]
then
  working_directory=`pwd`
fi
starting_directory=`pwd`
#
# Now extract the run number and file stem
#
# First, get the filename
file_name=$(basename "$file_path")
# 
# Now split based on '.' to get stem
defaultIFS=$IFS
IFS='.'
read file_stem ext <<< "$file_name"
#
# Finally extract the run number
IFS='-'
# Read the split words into an array based on delimiter
read faser type run_number segment <<< "$file_stem"
#
# Set the IFS delimeter back or else echo doesn't work...
IFS=$defaultIFS
#
# Make output directory if needed
output_directory="$working_directory/Run-$run_number"
mkdir -p "$output_directory"
#
# This magic redirects everything in this script to our log file
exec >& "$output_directory/$file_stem.log"
echo `date` - $HOSTNAME
echo "File: $file_name"
echo "Release: $release_directory"
echo "Output: $output_directory"
echo "Starting: $starting_directory"
#
# Set up the release (do this automatically)?
export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase
source $ATLAS_LOCAL_ROOT_BASE/user/atlasLocalSetup.sh 
#
# Try automatic
# Always go back to the starting directory in case paths are relative
cd "$starting_directory"
cd "$release_directory"
asetup
source build/x8*/setup.sh
#
# Do this by hand
# asetup --input="$release_directory/calypso/asetup.faser" Athena,22.0.40
# source "$release_directory/build/x8*/setup.sh"
#
#
# Try to find a release tag
cd calypso
recotag=`git describe`
if [[ "$recotag" == "reco/r"???? ]]; then
  rtag=`echo "$recotag" | cut -c 6-11`
  echo "Found reco tag: $rtag"
fi
#
# Move to the run directory
cd "$starting_directory"
cd "$output_directory"
#
# Remove any previous directory if it exists
if [[ -e "$file_stem" ]]; then
    echo "Remove previous directory $file_stem"
    rm -rf "$file_stem"
fi
#
# Make run directory
mkdir "$file_stem"
cd "$file_stem"
#
# Run job
if [ -z "$rtag" ]
then
    faser_reco.py "$file_path"
else
    faser_reco.py "--reco=$rtag" "$file_path"
fi
#
# Print out ending time
date