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Fix issue in GaudiPython atexit handler with Python 3

Marco Clemencic requested to merge lhcb/Gaudi:clemenci-fix-py3-atexit into master

the change in !875 (diffs) is actually introducing a regression when using Python 3 instead of Python 2.

This change fixes the problem and resolves lhcb/LHCb!2214 (comment 3642987)

I also added a minor fix for a special case.

Edited by Marco Clemencic

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