ApplicationMgr: Call all state transition for MessageSvc and JobOptionsSvc

The MessageSvc and JobOptionSvc were not following all the state transitions (https://its.cern.ch/jira/browse/GAUDI-274) as they are managed by the ApplicationMgr itself. Add the relevant calls to start, stop, reinitialize and restart.

P.S.: Turns out I submitted the above bug myself only to fix it myself 10 years later... 🤣