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A set of fixes from previous MRs

Anthony Correia requested to merge anthonyc/edges_not_from_node_encodings into main
  • Remove print statements when loading configuration (was there for debugging)
  • Define encoding_step (there were already message_step and edge_output_classifier_step, and this allows not to repeat code for the ONNX export)
  • Fix a typo in a configuration file

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