included again removed file by mistake

Closes BMK-73

alice/gen-sim/alice-dpgsim-bmk/dpgsim.sh

+#!/bin/bash
+
+# check ALIDPG_ROOT is set
+if [ -z "$ALIDPG_ROOT" ]; then
+    echo "ALIDPG_ROOT not set, abort."
+    exit 1
+fi
+
+# check ALICER_ROOT is set
+if [ -z "$ALICE_ROOT" ]; then
+    echo "ALICE_ROOT not set, abort."
+    exit 1
+fi
+
+# set job and simulation variables as :
+COMMAND_HELP="./dpgsim.sh --mode <mode> --run <run> --generator <generatorConfig> --energy <energy> --system <system> --detector <detectorConfig> --magnet <magnetConfig> --simulation <simulationConfig> --reconstruction <reconstructionConfig> --uid <uniqueID> --nevents <numberOfEvents> --qa <qaConfig> --aod <aodConfig> --ocdb <ocdbConfig> --hlt <hltConfig>"
+
+function runcommand(){
+    echo -e "\n"
+    echo -e "\n" >&2
+
+    echo "* $1 : $2"
+    echo "* $1 : output log in $3"
+    echo "* $1 : $2" >&2
+    echo "* $1 : output log in $3" >&2
+
+    START=`date "+%s"`
+    /usr/bin/time -f "%U" -o time.useronly aliroot -b -q -x $2 >>$3 2>&1
+    exitcode=$?
+    END=`date "+%s"`
+    echo "$1 TIME: `tail -n1 time.useronly`"
+
+    expectedCode=${5-0}
+
+    # check exit code
+    if [ "$exitcode" -ne "$expectedCode" ]; then
+        echo "*! $2 failed with exitcode $exitcode, expecting $expectedCode"
+        echo "*! $2 failed with exitcode $exitcode, expecting $expectedCode" >&2
+        echo "$2 failed with exitcode $exitcode, expecting $expectedCode" >> validation_error.message
+        exit ${4-$exitcode}
+    fi
+
+    # check potential sign of errors in the log file
+    errorStrings=(
+	"*** Interpreter error recovered ***" 
+	"*** Break *** segmentation violation" 
+	"*** Break *** floating point exception" 
+	"*** Break *** bus error")
+   
+    for I in "${errorStrings[@]}"; do
+	grep -F "$I" $3 > /dev/null;
+	if [ "$?" -ne "1" ]; then
+            echo "*! $2 failed, detected error in $3: ""$I"
+            echo "*! $2 failed, detected error in $3: ""$I" >&2
+            echo "$2 failed, detected error in $3: ""$I" >> validation_error.message
+            exit ${4-$exitcode}
+	fi
+    done
+
+    # all right, success
+    echo "* $2 finished with the expected exit code ($expectedCode), moving on"
+    echo "* $2 finished with the expected exit code ($expectedCode), moving on" >&2
+
+}
+
+CONFIG_NEVENTS="200"
+CONFIG_NBKG=""
+CONFIG_BGEVDIR=""
+CONFIG_SEED="0"
+CONFIG_GENERATOR=""
+CONFIG_BACKGROUND=""
+CONFIG_PROCESS=""
+CONFIG_PROCESSBIN=""
+CONFIG_MAGNET=""
+CONFIG_ENERGY=""
+OVERRIDE_ENERGY=""
+CONFIG_SYSTEM=""
+OVERRIDE_SYSTEM=""
+CONFIG_TRIGGER=""
+OVERRIDE_TRIGGER=""
+CONFIG_DETECTOR=""
+CONFIG_DETECTORMASK="0x0"
+CONFIG_PHYSICSLIST=""
+CONFIG_BMIN=""
+CONFIG_BMAX=""
+CONFIG_YMIN=""
+CONFIG_YMAX=""
+CONFIG_PTHARDBIN=""
+CONFIG_PTHARDMIN=""
+CONFIG_PTHARDMAX=""
+CONFIG_PTTRIGBIN=""
+CONFIG_PTTRIGMIN=""
+CONFIG_PTTRIGMAX=""
+CONFIG_QUENCHING=""
+CONFIG_QHAT=""
+CONFIG_RUN=""
+CONFIG_UID="1"
+CONFIG_SIMULATION=""
+CONFIG_RECONSTRUCTION=""
+CONFIG_QA=""
+CONFIG_AOD=""
+CONFIG_MODE="ocdb,full"
+CONFIG_OCDB="snapshot"
+CONFIG_HLT=""
+CONFIG_GEANT4=""
+CONFIG_MATERIAL=""
+
+RUNMODE=""
+
+while [ ! -z "$1" ]; do
+    option="$1"
+    shift
+
+    if [ "$option" = "--mode" ]; then
+	CONFIG_MODE="$1"
+	export CONFIG_MODE
+        shift
+    elif [ "$option" = "--run" ]; then
+	CONFIG_RUN="$1"
+	export CONFIG_RUN
+        shift
+    elif [ "$option" = "--uid" ]; then
+        CONFIG_UID="$1"
+	export CONFIG_UID
+        shift
+    elif [ "$option" = "--seed" ]; then
+        CONFIG_SEED="$1"
+	export CONFIG_SEED
+        shift
+    elif [ "$option" = "--generator" ]; then
+        CONFIG_GENERATOR="$1"
+	export CONFIG_GENERATOR
+        shift
+    elif [ "$option" = "--background" ]; then
+        CONFIG_BACKGROUND="$1"
+	export CONFIG_BACKGROUND
+	CONFIG_BGEVDIR="BKG"
+	export CONFIG_BGEVDIR
+        shift
+    elif [ "$option" = "--process" ]; then
+        CONFIG_PROCESS="$1"
+	export CONFIG_PROCESS
+        shift
+    elif [ "$option" = "--processbin" ]; then
+        CONFIG_PROCESSBIN="$1"
+	export CONFIG_PROCESSBIN
+        shift
+#    elif [ "$option" = "--magnet" ]; then
+#        CONFIG_MAGNET="$1"
+#	export CONFIG_MAGNET	
+#        shift
+    elif [ "$option" = "--detector" ]; then
+        CONFIG_DETECTOR="$1"
+	export CONFIG_DETECTOR
+        shift
+    elif [ "$option" = "--system" ]; then
+        OVERRIDE_SYSTEM="$1"
+        OVERRIDE_TRIGGER="$1"
+        shift
+    elif [ "$option" = "--trigger" ]; then
+        OVERRIDE_TRIGGER="$1"
+        shift
+    elif [ "$option" = "--energy" ]; then
+        OVERRIDE_ENERGY="$1"
+        shift
+    elif [ "$option" = "--simulation" ]; then
+        CONFIG_SIMULATION="$1"
+	export CONFIG_SIMULATION
+        shift
+    elif [ "$option" = "--reconstruction" ]; then
+        CONFIG_RECONSTRUCTION="$1"
+	export CONFIG_RECONSTRUCTION
+        shift
+    elif [ "$option" = "--qa" ]; then
+        CONFIG_QA="$1"
+	export CONFIG_QA
+        shift
+    elif [ "$option" = "--aod" ]; then
+        CONFIG_AOD="$1"
+	export CONFIG_AOD
+        shift
+#    elif [ "$option" = "--physicslist" ]; then
+#        CONFIG_PHYSICSLIST="$1"
+#	export CONFIG_PHYSICSLIST
+#        shift
+    elif [ "$option" = "--bmin" ]; then
+        CONFIG_BMIN="$1"
+	export CONFIG_BMIN
+        shift
+    elif [ "$option" = "--bmax" ]; then
+        CONFIG_BMAX="$1"
+	export CONFIG_BMAX
+        shift
+    elif [ "$option" = "--ymin" ]; then
+        CONFIG_YMIN="$1"
+	export CONFIG_YMIN
+        shift
+    elif [ "$option" = "--ymax" ]; then
+        CONFIG_YMAX="$1"
+	export CONFIG_YMAX
+        shift
+    elif [ "$option" = "--pthardbin" ]; then
+        CONFIG_PTHARDBIN="$1"
+	export CONFIG_PTHARDBIN
+        shift
+    elif [ "$option" = "--pthardmin" ]; then
+        CONFIG_PTHARDMIN="$1"
+	export CONFIG_PTHARDMIN
+        shift
+    elif [ "$option" = "--pthardmax" ]; then
+        CONFIG_PTHARDMAX="$1"
+	export CONFIG_PTHARDMAX
+        shift
+    elif [ "$option" = "--pttrigbin" ]; then
+        CONFIG_PTTRIGBIN="$1"
+	export CONFIG_PTTRIGBIN
+        shift
+    elif [ "$option" = "--pttrigmin" ]; then
+        CONFIG_PTTRIGMIN="$1"
+	export CONFIG_PTTRIGMIN
+        shift
+    elif [ "$option" = "--pttrigmax" ]; then
+        CONFIG_PTTRIGMAX="$1"
+	export CONFIG_PTTRIGMAX
+        shift
+    elif [ "$option" = "--quenching" ]; then
+        CONFIG_QUENCHING="$1"
+	export CONFIG_QUENCHING
+        shift
+    elif [ "$option" = "--qhat" ]; then
+        CONFIG_QHAT="$1"
+	export CONFIG_QHAT
+        shift
+    elif [ "$option" = "--nevents" ]; then
+        CONFIG_NEVENTS="$1"
+	export CONFIG_NEVENTS
+        shift
+    elif [ "$option" = "--nbkg" ]; then
+        CONFIG_NBKG="$1"
+	export CONFIG_NBKG
+        shift
+    elif [ "$option" = "--ocdb" ]; then
+        CONFIG_OCDB="$1"
+        if [[ $CONFIG_OCDB == cvmfs* ]]; then
+            OCDB_PATH=${CONFIG_OCDB#*:}
+            [[ ! $OCDB_PATH || $OCDB_PATH == $CONFIG_OCDB ]] && OCDB_PATH=/cvmfs/alice-ocdb.cern.ch
+            export OCDB_PATH
+            CONFIG_OCDB=cvmfs
+        fi
+        export CONFIG_OCDB
+        shift
+    elif [ "$option" = "--hlt" ]; then
+        CONFIG_HLT="$1"
+	export CONFIG_HLT
+        shift
+    elif [ "$option" = "--material" ]; then
+        CONFIG_MATERIAL="$1"
+	export CONFIG_MATERIAL
+        shift
+    elif [ "$option" = "--geant4" ]; then
+        CONFIG_GEANT4="on"
+	export CONFIG_GEANT4
+        shift
+#    elif [ "$option" = "--sdd" ]; then
+#        RUNMODE="SDD"
+#	export RUNMODE
+#	shift
+    fi
+done
+
+DC_RUN=$CONFIG_RUN
+DC_EVENT=$CONFIG_UID
+export DC_RUN DC_EVENT
+
+if [ "$CONFIG_SEED" -eq 0 ]; then
+    CONFIG_SEED=$((ALIEN_PROC_ID%1000000000))
+fi
+if [ "$CONFIG_SEED" -eq 0 ]; then
+    CONFIG_SEED=$(((CONFIG_RUN*100000+CONFIG_UID)%1000000000))
+    CONFIG_SEED_BASED="run / unique-id : $CONFIG_RUN / $CONFIG_UID"
+else
+    CONFIG_SEED_BASED="AliEn job ID"
+fi
+export CONFIG_SEED
+
+if [ "$CONFIG_SEED" -eq 0 ]; then
+    echo "*!  WARNING! Seeding variable for MC is 0 !" >&2
+fi
+
+if [ ! -z "$CONFIG_PTHARDBIN" ]; then
+
+    # Define the pt hard bin arrays
+    pthardbin_loweredges=(0 5 7 9 12 16 21 28 36 45 57 70 85 99 115 132 150 169 190 212 235)
+    pthardbin_higheredges=( 5 7 9 12 16 21 28 36 45 57 70 85 99 115 132 150 169 190 212 235 -1)
+
+    # Define environmental vars for pt binning
+    CONFIG_PTHARDMIN=${pthardbin_loweredges[$CONFIG_PTHARDBIN]}
+    CONFIG_PTHARDMAX=${pthardbin_higheredges[$CONFIG_PTHARDBIN]}
+    export CONFIG_PTHARDMIN CONFIG_PTHARDMAX
+
+fi
+
+if [ ! -z "$CONFIG_PROCESSBIN" ]; then
+
+    # Define process array
+    if [[ $CONFIG_GENERATOR == *"Starlight"* ]]; then
+	process_names=(TwoGammaToMuLow TwoGammaToElLow TwoGammaToMuMedium TwoGammaToElMedium TwoGammaToMuHigh TwoGammaToElHigh CohRhoToPi CohJpsiToMu CohJpsiToEl CohPsi2sToMu CohPsi2sToEl CohPsi2sToMuPi CohPsi2sToElPi CohUpsilonToMu CohUpsilonToEl IncohRhoToPi IncohJpsiToMu IncohJpsiToEl IncohPsi2sToMu IncohPsi2sToEl IncohPsi2sToMuPi IncohPsi2sToElPi IncohUpsilonToMu IncohUpsilonToEl)
+	CONFIG_PROCESS=${process_names[$CONFIG_PROCESSBIN]}
+    fi
+
+    # check if well defined
+    if [ -z "$CONFIG_PROCESS" ]; then
+	echo "Undefined processbin $CONFIG_PROCESSBIN for generator $CONFIG_GENERATOR"
+	exit 1;
+    fi
+    export CONFIG_PROCESS
+
+fi
+
+# mkdir input
+# mv galice.root ./input/galice.root
+# mv Kinematics.root ./input/Kinematics.root
+# ls input
+
+export ALIMDC_RAWDB1="./mdc1"
+export ALIMDC_RAWDB2="./mdc2"
+export ALIMDC_TAGDB="./mdc1/tag"
+export ALIMDC_RUNDB="./mdc1/meta"
+
+export PYTHIA8DATA="$ALICE_ROOT/PYTHIA8/pythia8/xmldoc"
+export LHAPDF="$ALICE_ROOT/LHAPDF"
+export LHAPATH="$ALICE_ROOT/LHAPDF/PDFsets"
+
+if [ -f "$G4INSTALL/bin/geant4.sh" ]; then
+    echo "* Sourcing G4 environment from $G4INSTALL/bin/geant4.sh"
+    source $G4INSTALL/bin/geant4.sh
+fi
+
+### check whether we are in OCDB generation job
+
+if [[ $ALIEN_JDL_LPMOCDBJOB == "true" ]]; then
+    echo ">>>>> OCDB generation: force MODE to 'ocdb'"
+    export CONFIG_MODE="ocdb"
+fi
+
+### createSnapshot.C
+
+if [[ $CONFIG_MODE == *"ocdb"* ]]; then
+
+echo
+echo "============================================"
+echo " DPGSIM - Snapshot"
+echo "============================================"
+echo
+
+    OCDBC=$ALIDPG_ROOT/MC/CreateSnapshot.C
+    if [ -f CreateSnapshot.C ]; then
+	SIMC=CreateSnapshot.C
+    fi
+
+    runcommand "OCDB SIM SNAPSHOT" $OCDBC\(0\) ocdbsim.log 500
+    mv -f syswatch.log ocdbsimwatch.log
+    if [ ! -f OCDBsim.root ]; then
+	echo "*! Could not find OCDBsim.root, the snapshot creation chain failed!"
+	echo "Could not find OCDBsim.root, the snapshot creation chain failed!" >> validation_error.message
+	exit 2
+    fi
+
+    runcommand "OCDB REC SNAPSHOT" $OCDBC\(1\) ocdbrec.log 500
+    mv -f syswatch.log ocdbrecwatch.log
+    if [ ! -f OCDBrec.root ]; then
+	echo "*! Could not find OCDBrec.root, the snapshot creation chain failed!"
+	echo "Could not find OCDBrec.root, the snapshot creation chain failed!" >> validation_error.message
+	exit 2
+    fi
+
+fi
+
+### check basic requirememts
+
+    if [[ $CONFIG_MODE == "" ]]; then
+	echo ">>>>> ERROR: mode is required!"
+	echo $COMMAND_HELP
+	exit 2
+    fi
+
+if [[ $CONFIG_RUN == "" ]]; then
+    echo ">>>>> ERROR: run number is required!"
+    echo $COMMAND_HELP
+    exit 2
+fi
+
+if [[ $CONFIG_OCDB == *"snapshot"* ]]; then
+
+    if [ ! -f OCDBsim.root ]; then
+	echo ">>>>> ERROR: Could not find OCDBsim.root"
+    fi
+    if [ ! -f OCDBrec.root ]; then
+	echo ">>>>> ERROR: Could not find OCDBrec.root"
+	exit 2
+    fi
+fi
+
+### automatic settings from CONFIG_MODE
+
+if [[ $CONFIG_MODE == *"MuonOnly"* ]]; then
+
+    if [[ $CONFIG_DETECTOR == "" ]]; then
+        CONFIG_DETECTOR="Muon"
+        export CONFIG_DETECTOR
+    fi
+
+    if [[ $CONFIG_SIMULATION == "" ]]; then
+        CONFIG_SIMULATION="MuonOnly"
+        export CONFIG_SIMULATION
+    fi
+
+    if [[ $CONFIG_RECONSTRUCTION == "" ]]; then
+        CONFIG_RECONSTRUCTION="MuonOnly"
+        export CONFIG_RECONSTRUCTION
+    fi
+
+    if [[ $CONFIG_QA == "" ]]; then
+        CONFIG_QA="MuonOnly"
+        export CONFIG_QA
+    fi
+
+    if [[ $CONFIG_AOD == "" ]]; then
+        CONFIG_AOD="MuonOnly"
+        export CONFIG_AOD
+    fi
+
+elif [[ $CONFIG_MODE == *"Muon"* ]]; then
+
+    if [[ $CONFIG_DETECTOR == "" ]]; then
+        CONFIG_DETECTOR="Muon"
+        export CONFIG_DETECTOR
+    fi
+
+    if [[ $CONFIG_SIMULATION == "" ]]; then
+        CONFIG_SIMULATION="Muon"
+        export CONFIG_SIMULATION
+    fi
+
+    if [[ $CONFIG_RECONSTRUCTION == "" ]]; then
+        CONFIG_RECONSTRUCTION="Muon"
+        export CONFIG_RECONSTRUCTION
+    fi
+
+    if [[ $CONFIG_QA == "" ]]; then
+        CONFIG_QA="Muon"
+        export CONFIG_QA
+    fi
+
+    if [[ $CONFIG_AOD == "" ]]; then
+        CONFIG_AOD="Muon"
+        export CONFIG_AOD
+    fi
+
+fi
+
+### automatic settings from GRP info
+
+aliroot -b -q $ALIDPG_ROOT/MC/ExportGRPinfo.C\($CONFIG_RUN\) 2>/dev/null | grep export > grpdump.sh && source grpdump.sh # && rm grpdump.sh
+
+### override automatic settings from GRP info if requested
+
+if [[ $OVERRIDE_ENERGY != "" ]]; then
+    export CONFIG_ENERGY=$OVERRIDE_ENERGY
+fi
+
+if [[ $OVERRIDE_SYSTEM != "" ]]; then
+    export CONFIG_SYSTEM=$OVERRIDE_SYSTEM
+fi
+
+if [[ $OVERRIDE_TRIGGER != "" ]]; then
+    export CONFIG_TRIGGER=$OVERRIDE_TRIGGER
+fi
+
+### check if custom trigger configuration file Custom.cfg is present
+if [ $CONFIG_TRIGGER = "Custom.cfg" ] && [ ! -f Custom.cfg ]; then
+    echo "Custom.cfg trigger configuration requested, file not present"
+    exit 1
+fi
+
+##########################################
+
+echo
+echo "============================================"
+echo " DPGSIM"
+echo "============================================"
+echo "Run.............. $CONFIG_RUN"
+echo "Mode............. $CONFIG_MODE"
+echo "QA train......... $CONFIG_QA"
+echo "AOD train........ $CONFIG_AOD"
+echo "============================================"
+echo "Year............. $CONFIG_YEAR"
+echo "Period........... $CONFIG_PERIOD"
+echo "Beam type........ $CONFIG_BEAMTYPE"
+echo "Energy........... $CONFIG_ENERGY"
+echo "Detector mask.... $CONFIG_DETECTORMASK"
+echo "============================================"
+echo "Generator........ $CONFIG_GENERATOR"
+echo "Process.......... $CONFIG_PROCESS"
+echo "No. Events....... $CONFIG_NEVENTS"
+echo "Unique-ID........ $CONFIG_UID"
+echo "MC seed.......... $CONFIG_SEED"
+echo "============================================"
+echo "Background....... $CONFIG_BACKGROUND"
+echo "No. Events....... $CONFIG_NBKG"
+#echo "MC seed.......... $CONFIG_SEED (based on $CONFIG_SEED_BASED)"
+echo "============================================"
+echo "Detector......... $CONFIG_DETECTOR"
+echo "GEANT4........... $CONFIG_GEANT4"
+echo "Material Budget.. $CONFIG_MATERIAL"
+echo "Simulation....... $CONFIG_SIMULATION"
+echo "Reconstruction... $CONFIG_RECONSTRUCTION"
+echo "System........... $CONFIG_SYSTEM"
+echo "Trigger.......... $CONFIG_TRIGGER"
+echo "OCDB............. $CONFIG_OCDB"
+echo "HLT.............. $CONFIG_HLT"
+echo "============================================"
+#echo "B-field.......... $CONFIG_MAGNET"
+#echo "Physicslist...... $CONFIG_PHYSICSLIST"
+echo "b-min............ $CONFIG_BMIN"
+echo "b-max............ $CONFIG_BMAX"
+echo "y-min............ $CONFIG_YMIN"
+echo "y-max............ $CONFIG_YMAX"
+echo "============================================"
+echo "pT-hard bin...... $CONFIG_PTHARDBIN"
+echo "pT-hard min...... $CONFIG_PTHARDMIN"
+echo "pT-hard max...... $CONFIG_PTHARDMAX"
+echo "pT-trigger bin... $CONFIG_PTTRIGBIN"
+echo "pT-trigger min... $CONFIG_PTTRIGMIN"
+echo "pT-trigger max... $CONFIG_PTTRIGMAX"
+echo "quenching........ $CONFIG_QUENCHING"
+echo "q-hat............ $CONFIG_QHAT"
+echo "============================================"
+echo
+
+### sim.C
+
+if [[ $CONFIG_MODE == *"sim"* ]] || [[ $CONFIG_MODE == *"full"* ]]; then
+
+    if [[ $CONFIG_GENERATOR == "" ]]; then
+	echo ">>>>> ERROR: generator is required for full production mode!"
+	echo $COMMAND_HELP
+	exit 2
+    fi
+
+    if [[ $CONFIG_SYSTEM == "" ]]; then
+	echo ">>>>> ERROR: system is required for full production mode!"
+	echo $COMMAND_HELP
+	exit 2
+    fi
+
+    SIMC=$ALIDPG_ROOT/MC/sim.C
+    if [ -f sim.C ]; then
+	SIMC=sim.C
+    fi
+
+    # embedding using already generated background
+    if [[ $CONFIG_BACKGROUND == *galice.root ]]; then
+
+	echo ">>>>> EMBEDDING: request to embed $CONFIG_GENERATOR signal in $CONFIG_BACKGROUND background"
+	export CONFIG_SIMULATION="EmbedSig"	
+	export CONFIG_BGEVDIR=${CONFIG_BACKGROUND%galice.root}
+	
+    # embedding using on-the-fly generated background
+    elif [[ $CONFIG_BACKGROUND != "" ]]; then
+
+	CONFIG_BGEVDIR=$CONFIG_BACKGROUND
+	export CONFIG_BGEVDIR
+
+	echo ">>>>> EMBEDDING: request to embed $CONFIG_GENERATOR signal in $CONFIG_BACKGROUND background"
+
+	if [[ $CONFIG_NBKG == "" ]]; then
+	    export CONFIG_NBKG=1
+	fi
+	
+	SAVE_CONFIG_GENERATOR=$CONFIG_GENERATOR
+	SAVE_CONFIG_NEVENTS=$CONFIG_NEVENTS
+	SAVE_CONFIG_SIMULATION=$CONFIG_SIMULATION
+	export CONFIG_GENERATOR=$CONFIG_BACKGROUND
+	export CONFIG_NEVENTS=$CONFIG_NBKG
+	export CONFIG_SIMULATION="EmbedBkg"
+	export CONFIG_BGEVDIR="BKG"
+	
+	mkdir $CONFIG_BGEVDIR
+	cp OCDB*.root *.C $CONFIG_BGEVDIR/.
+	cd $CONFIG_BGEVDIR
+
+	runcommand "BACKGROUND" $SIMC sim.log 5
+	mv -f syswatch.log simwatch.log
+
+	cd ..
+
+	export CONFIG_GENERATOR=$SAVE_CONFIG_GENERATOR
+	export CONFIG_NEVENTS=$SAVE_CONFIG_NEVENTS
+	export CONFIG_SIMULATION="EmbedSig"
+	
+    fi
+
+    runcommand "SIMULATION" $SIMC sim.log 5
+    mv -f syswatch.log simwatch.log
+fi
+
+### rec.C
+
+if [[ $CONFIG_MODE == *"rec"* ]] || [[ $CONFIG_MODE == *"full"* ]]; then
+
+    RECC=$ALIDPG_ROOT/MC/rec.C
+    if [ -f rec.C ]; then
+	RECC=rec.C
+    fi
+
+    runcommand "RECONSTRUCTION" $RECC rec.log 10
+    mv -f syswatch.log recwatch.log
+    if [ ! -f AliESDs.root ]; then
+	echo "*! Could not find AliESDs.root, the simulation/reconstruction chain failed!"
+	echo "Could not find AliESDs.root, the simulation/reconstruction chain failed!" >> validation_error.message
+	exit 2
+    fi
+
+    TAGC=$ALIDPG_ROOT/MC/tag.C
+    if [ -f tag.C ]; then
+	TAGC=tag.C
+    fi
+    runcommand "TAG" $TAGC tag.log 50
+
+    CHECKESDC=$ALIDPG_ROOT/MC/CheckESD.C
+    if [ -f CheckESD.C ]; then
+	CHECKESDC=CheckESD.C
+    fi
+    runcommand "CHECK ESD" $CHECKESDC check.log 60 1
+
+    # delete files not needed anymore
+    if [[ $CONFIG_SIMULATION == "EmbedBkg" ]]; then
+	rm -f *.RecPoints.root *.Digits.root
+	ls *.Hits.root | grep -v T0.Hits.root | xargs rm
+    else
+	rm -f *.RecPoints.root *.Hits.root *.Digits.root *.SDigits.root
+    fi
+
+fi
+
+### QAtrainsim.C
+
+if [[ $CONFIG_MODE == *"qa"* ]] || [[ $CONFIG_MODE == *"full"* ]]; then
+
+    echo "QAresults.root" >> validation_extrafiles.list
+
+    QATRAINSIMC=$ALIDPG_ROOT/QA/QAtrainsim.C\($CONFIG_RUN\)
+    if [ -f QAtrainsim.C ]; then
+	QATRAINSIMC=QAtrainsim.C\($CONFIG_RUN\)
+    fi
+
+    runcommand "QA TRAIN" $QATRAINSIMC qa.log 1000
+    mv -f syswatch.log qawatch.log
+
+    for file in *.stat; do
+	mv -f "$file" "$file.qa"
+    done
+
+fi
+
+### AODtrainsim.C
+
+if [[ $CONFIG_MODE == *"aod"* ]] || [[ $CONFIG_MODE == *"full"* ]]; then
+
+    echo "AliAOD.root" >> validation_extrafiles.list
+
+    AODTRAINSIMC=$ALIDPG_ROOT/AOD/AODtrainsim.C
+    if [ -f AODtrainsim.C ]; then
+	AODTRAINSIMC=AODtrainsim.C
+    fi
+
+    rm -f outputs_valid &>/dev/null
+
+    runcommand "AOD TRAIN" $AODTRAINSIMC aod.log 1000
+    mv -f syswatch.log aodwatch.log
+
+    for file in *.stat; do
+	mv -f $file $file.aod
+    done
+fi
+
+exit 0