TODO:
TransformationClient().getBookkeepingQuery(id)
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*AnalysisProductionsDB
NEW: Add require_has_publication
boolean flag to getProductions to facilitate querying samples with publications
*AnalysisProductionsDB NEW: Add input query to transformation info of getProductions.
*AnalysisProductionsDB CHANGE: getPublications now returns samples grouped by publication number, which can be used to view all published samples (or a specific subset).
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