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Enable complete CI, enable warnings

Daniel Campora Perez requested to merge allen_tdr_enable_CI_back into allen_tdr

This MR enables back all the warnings and solves them. It also enables back the complete CI, including:

  • Clang build.
  • ROOT and Debug builds.
  • Execution of ROOT and Debug builds.

Also, the reference files are updated after their change due to the new lines and the Gaudi format in the performance numbers.

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