This MR adds in the ability to configure CPU algorithms in the sequence by a similar method to the existing one.
In addition, the Monte Carlo validation iterates over all configured algorithms and is run only for those that were pre-configured to be validated when run.
CPU algorithms can be configured in the sequence now.
A CPU_ALGORITHM must be declared, with its function and
desired type name. Header files can include CpuHandler.cuh.
for this purpose.
The header file should be included in ConfiguredSequence.cuh.
Algorithm dependencies must be defined for CPU algorithms too.
The dependencies refer only to GPU datatypes.
A new sequence, CPUSciFi, has been defined.
The configured sequence is iterated for validation
with Monte Carlo data at the end of the sequence,
if configured to do so (-c 1).
Sequence checkers need to be specified under the
sequence_checkers/include directory, and included under
Stream.cu. The existing ones can also be extended.
Huge refactoring of the Monte Carlo validation code.
velopix-input-reader has been refactored into the more
fitting name MCEvent.
Monte Carlo data are only read once for all checkers,
and data is replicated into three containers: velo_mcps,
ut_mcps and scifi_mcps, with templated data accessors for each.
All tools to use the checker have been moved to checker/tracking.
As a consequence, TrackChecking is now a CUDA library, as it requires
to know about cuda_runtime.h.
The class PrCheckerInvoker has been created, and it has a constructor
and a single templated check method.
PrepareTracks holds all methods to prepare tracks, specialized
for existing datatypes.
Obsolete run options have been removed. -x no more configures an x86 sequence,
this is done at compile time now. The option for the "simplified Kalman filter"
has been removed since it was not used anymore.
Printing the memory consumption is only done once after all allocations have taken place.
