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Minor fixes to tests

Marco Cattaneo requested to merge fix-tests-run2 into run2-patches

Backport of !336 (merged)

  • avoid $BOOLEROOT in .qmt files (as much as possible) in preparation for CMake modernization
  • run tests in temporary directory in build directory (easier maintenance of source tree)
  • remove GeneratorLogFSR.xml in test options (so before running the test) and not after the test (how one is supposed to debug failures otherwise?)

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