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Use pre-commit for formatting and flake8 checks

Marco Clemencic requested to merge use-pre-commit-take2 into master

This is a partial version of !4346 in the sense that it adds support for checking the formatting with pre-commit, but does not require a full reformatting (since clang-format-8 is now available for pre-commit).

This can be merged any time as it does not require file changes and the reformatting can happen another time (e.g. YETS).

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