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Mitigate very slow ref validation in hlt2_protoparticles test

Rosen Matev requested to merge rm-mitigate-434 into master

Partially addresses #434 by removing the grouping of multi-line messages with GroupMessages. The latter led to ndiff trying to compare very long lines, which apparently is a problem for it. With this MR, the test runtime should be reduced from many hours to <2 minutes.

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