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Increase timeouts for tests that have timed out in the last week

Ross John Hunter requested to merge rjhunter-fix-timeouts into master

I looked through the nightly build logs for the last week and have increased the timeouts for tests that failed over that period. Note that the timeout for test_hlt2_example.py was already increased in !22 (merged). Might need a run in the nightlies to make sure that there are no timeouts there before merging.

Closes #14 (closed).

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