Complete the removal of upgrade options from the Reco configuration

Clean up of configurations to remove mentions of Upgrade, not supported on this branch

Cherry-picked from !1848 (merged)

To be backported also to lhcb-stripping24r2-28r2-patches 2017-patches 2016-patches reco15-patches, hlt2016-patches

a400bb58 to be forward ported to run2-patches