The pythonization of TFile::root was calling the SetSize method
on a PyROOT buffer object.  The argument that SetSize takes is the
number of elements in the buffer, where the size of each element
depends on how the buffer was created.  Here, however, we were
passing to SetSize a number of bytes.

The buffer elements we were seeing were void*, which have size 8.
So the buffer size was getting misset by a factor of 8.
This was leading to a crash in the input file peeker.

This crash was however only observed in the muRunData test of TrigUpgradeTest,
and only when it was run with --stdcmalloc and MALLOC_CHECK_=3.
It's a bit a mystery why this apparently long-standing bug hasn't 
caused problems before.



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* Merge the obsolete bin/gen_klass.py with acmd.py
* Change the gen_klass alias to 'acmd.py gen-klass'
* Add a testing script for gen-klass


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Dan Andrei Ciubotaru authored 7 years ago and Vakhtang Tsulaia committed 7 years ago

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Tamara Vazquez Schroeder authored 7 years ago and Atlas Nightlybuild committed 7 years ago

Remove deprecated simplejson module

See merge request atlas/athena!9820

(cherry picked from commit ddd10c0b [formerly cbe74ccb])

c80ebbc2 Remove deprecated simplejson module

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Tamara Vazquez Schroeder authored 7 years ago and Atlas Nightlybuild committed 7 years ago

Transform support for input files specified as WebDAV TURLs (ATLASJT-376)

See merge request atlas/athena!8074

(cherry picked from commit 1495609e [formerly 18565a5281bf9877b7d84e11de667c7df56b7638])

6ff72308 Transform support for input files specified as WebDAV TURLs (ATLASJT-376)
9c792014 Transform support for input files specified as WebDAV TURLs (ATLASJT-376)
05cc1a4d Clean up of commented code

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This reverts commit cdf718bf [formerly 9d67f5b8].


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This reverts commit 9156e32a [formerly f73d17d3], reversing
changes made to 27d106d1 [formerly 8f2f5188].


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access to files on eos where the hostname is specified as "eosatlas"
only works from within the cern.ch network. The full domain name needs
to be specified to enable access from sites outside of cern, ie
eosatlas.cern.ch


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Final commit for the PyCintex cleanup of Master. Includes Trigger
packages and the removal of PyCintex support from
Tools/PyUtils/python/Helpers.py:ROOT6Setup()


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Removing references to PyCintex, Reflex and ROOT6Setup from PyUtils
as final cleanup after the ROOT6 transition
ROOT6Setup remains in Helpers as it is still in use by other packages
Note: Dso.py was earlier disabled and this commit does not fix it

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Should fix ATLASSIM-3303.


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  Fixed doxygen @class capitalization
  Fixed doxygen @warning capitalization
  Fixed doxygen parem typo
  Fixed doxygen details typo
  Fixed doxygen formula syntax
  misc doxygen changes


Former-commit-id: d3e1b7ef

2016-10-25 Johannes Elmsheuser <Johannes.Elmsheuser@cern.ch>
	* python/AthFileLite.py - add support for multiple redirector arguments
	* Tagging as PyUtils-00-14-90
2016-10-25 Johannes Elmsheuser <Johannes.Elmsheuser@cern.ch>
	* python/AthFileLite.py - add https support
	* Tagging as PyUtils--00-14-89
2016-10-18 Marcelo Vogel <marcelo.vogel@cern.ch>
	* bin/lstags : fixed the return of release package versions for cmake builds (ATLASJT-342)
	* tag PyUtils--00-14-88

2016-10-03 Walter Lampl <walter.lampl@ cern.ch>
	* tag PyUtils-00-14-87
2016-09-20 Will Buttinger <will@cern.ch>
	* python/scripts/cmt_newanalysisapp.py , newjobo.py , newanalysisalg.py : small improvements and updates to skeletons
	* tag PyUtils-00-14-86


Former-commit-id: dededf12

	* python/AthFileLite.py: Port back changes from PyUtils-00-14-90 to support https and rucio redirector
	* branch tag PyUtils-00-14-85-04


Former-commit-id: fdc42192

	* checkxAOD: add patterns to categorize previously 'Unknown' containers (ATEAM-317)
	* branch tag PyUtils-00-14-85-02


Former-commit-id: ad24a132

	* Tagging as PyUtils-00-14-85-01
	* python/AthFile/impl.py: Revert to DEFAULT implementation
	(Jira: ATLASJIT-331 and ATEAM-333).

2016-08-09 Walter Lampl <walter.lampl@ cern.ch>
	* resurrect get-tag-diff.py
	* tag PyUtils-00-14-85

2016-07-14  edward.moyse@cern.ch
	* python/scripts/jira_issues.py - first attempt at JIRA interface
      - This has a few not so desirable features at the moment. You need to have the requests library installed, which you can do with : pip install --user requests
	* tag PyUtils-00-14-84

2016-07-14  Frank Winklmeier  <fwinkl@cern>
	* python/AmiLib.py (Client.get_releases): Fix the retrieval of the open TC releases, fix project retrieval
	* tag PyUtils-00-14-83

2016-06-20 Will Buttinger <will@cern.ch>
   * python/scripts/new_asgtool : added comments re how to access concrete tool class in test application
    * tag PyUtils-00-14-82
...
(Long ChangeLog diff - truncated)


Former-commit-id: 0fd8676d

	* Tagging PyUtils-00-14-80.
	* Remove references to nonexistent bin/getTagDiff.py.

2016-06-06 Will Buttinger <will@cern.ch>
	* python/scripts/new_asgtool : Added missing ../Root/*.cxx to library line if no library line present in requirements file
	* bin/getMetadata.py: added crossSection_pb special field for crossSections in pb. Also made default output format to files same as to screen, and fixed the final comment line for reproducing the file
	* tag PyUtils-00-14-79 (78 was mistagged)

2016-05-27 Will Buttinger <will@cern.ch>
	* bin/getMetadata.py: fix handling of case where no metadata available for a dataset
	* tag PyUtils-00-14-77

2016-05-25 Will Buttinger <will@cern.ch>
	* moved getAMIDatasetParameters.py to getMetadata.py and improved efficiency of script to query database
	* tag PyUtils-00-14-76


Former-commit-id: 625bffcc

2016-04-27 Walter Lampl <walter.lampl@ cern.ch>
	* rewrite of get-tag-diff.py to be cmt and cmake compatible
	* tag PyUtils-00-14-75

2016-04-12  scott snyder  <snyder@bnl.gov>

	* Tagging PyUtils-00-14-74.
	* python/RootUtils.py: Remove diagnostics.  Keep temp files open
	through the end of program execution to avoid cling caching
	issues.

2016-04-11  scott snyder  <snyder@bnl.gov>

	* Tagging PyUtils-00-14-73.
	* Still working on ATN test failure.  Seems to be related to
	ROOT-7059.

2016-04-11 Will Buttinger <will@cern.ch>
	* bin/getAMIDatasetParameters.py: improved default printout, preserve order of specified datasets, and preserve comments/blanklines from file in the inDsTxt
	* Tagging PyUtils-00-14-72
...
(Long ChangeLog diff - truncated)

	* Merge PyUtils-00-14-43:
	*   python\scripts\diff_root_files.py (main.tree_infos): fix
	    scanning of leaf names
	* Tagging PyUtils-00-14-34-07

	** Merge of PyUtils-00-14-45 changes
	* cmt/requirements
	* bin/icython.py
	- Remove old icython.py script
	* test/PyUtils.xml
	- Change ATN contact info to atlas-srl-Core-Tools@cern.ch
	* ChangeLog
	- Fixup for missing logs for PyUtils-00-14-34-05
	* Tagging PyUtils-00-14-34-06

2015-06-30 Alexandre Vaniachine <vaniachine@anl.gov>
	* python/AthFile/impl.py
	- backporting PyUtils-00-14-42 for ATEAM-186
	* Tagging PyUtils-00-14-34-05

2015-06-26 Alexandre Vaniachine <vaniachine@anl.gov>
	* python/RootUtils.py
	- backporting PyUtils-00-14-40 for ATEAM-182
	* Tagging PyUtils-00-14-34-03

...
(Long ChangeLog diff - truncated)

	* merged diff between PyUtils-00-14-37 PyUtils-00-14-38:
	* python\PoolFile.py (extract_streams_from_tag): workaround for
	PyROOT getattr(tree, branchname) bug in ROOT 5.34.25 for reading
	Tokens from TAG files (https://its.cern.ch/jira/browse/ATLASRECTS-1489)
	* Tagging PyUtils-00-14-34-01

2015-06-04  Marcin Nowak  <Marcin.Nowak@cern.ch>
	* bin\getTagDiff.py: improved handling of LCG and MIG tags
	* Tagging PyUtils-00-14-34

2015-06-01  Marcin Nowak  <Marcin.Nowak@cern.ch>
	* python\scripts\diff_root_files.py: fix --ignore-leaves which
	broke in the last tag
	* Tagging PyUtils-00-14-32
	* make --ignore-leaves able to ignore subbranches
	* Tagging PyUtils-00-14-33

2015-05-28  Marcin Nowak  <Marcin.Nowak@cern.ch>
	* python\scripts\diff_root_files.py: rewrote the code to
	handle differencies better
...
(Long ChangeLog diff - truncated)

	* Tagging PyUtils-00-14-27.
	* python/RootUtils.py: Don't dump transient members.

2015-04-23  Alexandre Vaniachine <vaniachine@anl.gov>

	* Tagging PyUtils-00-14-25
	* python/AthFile/impl.py: Fix for ATEAM-122: IS_DATA for BS files from SFO

2015-04-22  scott snyder  <snyder@bnl.gov>

	* Tagging PyUtils-00-14-24.
	* python/RootUtils.py (RootFileDumper): Fix for non-class
	branches.

2015-04-16 Graeme Stewart <graeme.andrew.stewart@cern.ch>
	* bin/diffTAGTree.py
	- Continue to check events that do match between TAG files
	  even when TAG files have different content or have
	  duplicates
...
(Long ChangeLog diff - truncated)

	* bin/checkxAOD.py: extend to work with ESD - summing together the aux and dyn, and adding
	in extra trees for the indet/muon tracking
	* tagging as PyUtils-00-14-15

2015-02-20  Marcin Nowak  <Marcin.Nowak@cern.ch>
	* python\Dso.py (CxxDsoDb.__init__): another ROOT version check fix
	* Tagging as PyUtils-00-14-14

	* python\Dso.py (gen_typeregistry_dso): Fixed ROOT version checks
	for ROOT5: ATEAM-112. Disabled DSO functionality for ROOT6
	* Tagging as PyUtils-00-14-13

2015-02-16 Will Buttinger <will@cern.ch>
	* python/WorkAreaLib.py: added AthAnalysisBase to exceptions list, so that WorkArea requirements file is generated correctly
	* Tagging as PyUtils-00-14-12

	- Fix pkgco.py for checkout of Gaudi packages
	* python/RootUtils.py
	- Enable cppyy in import_root helper
	* Tagging as PyUtils-00-14-11 (PyUtils-00-14-11)

	* bin/pkgco.py
	- Fix pkgco.py for checkout of Gaudi packages
	* python/RootUtils.py
	- Enable cppyy in import_root helper
	* Tagging as PyUtils-00-14-11

2015-01-16  Marcin Nowak  <Marcin.Nowak@cern.ch>
	* python\Dso.py: Add ROOT6 setup
	* Tagging as PyUtils-00-14-10

2014-12-22 Peter van Gemmeren  <gemmeren@anl.gov>
	* python/scripts/diff_root_files.py: Add ROOT6 setup
	* Tagging as PyUtils-00-14-09

2014-12-18 Graeme Stewart <graeme.andrew.stewart@cern.ch>
	* python/AmiLib.py
	- Remove duplicate results from get_pkg_info
	* python/scripts/tc_submit_tag.py
	- Fix readline history in query_project

reporting, throw proper exceptions.
Prevent AthFileLits from running AthenaMP mode (PyUtils-00-14-07)

	* python/AmiLib.py
	- Remove commented out code
	* Tagging as PyUtils-00-14-07

2014-12-18 Graeme Stewart <graeme.andrew.stewart@cern.ch>
	* python/AmiLib.py
	- Another big refactoring:
	- badresult improved and now returns a boolean and an error message
	- Rename dry_run to dryrun for consistency
	- Introduce PyUtilsAMIException exception, which now gets thrown
	  consistently if there are problems
	- Consolidate the functions of get_project_of_pkg, get_version_of_pkg
	  and tc_submit_tag._get_projects into single method get_pkg_info
	- Rewrite get_version_of_pkg_with_deps to use module utilities
	- Simplify find_pkg to remove callback function
	* python/scripts/tc_find_pkg.py
	* python/scripts/tc_find_tag.py
	- Embed script in try: except PyUtilsAMIException:
	* python/scripts/tc_show_clients.py
	- Update to get_pkg_info (N.B. Script is still non-functional and disabled)
...
(Long ChangeLog diff - truncated)

gen_klass of AlgTool: Remove obsolete usage of StoreGateSvc (done by AthAlgTool base now) (PyUtils-00-13-22)