[lint] Replace deprecated headers

Except for header dependency of C source file, all instances of stdint.h are replaced by cstdint.

src/MicronDmaInputFilter.cc

 #include "MicronDmaInputFilter.h"
 
-#include <ctype.h>
-
+#include <cctype>
 #include <cstring>
 #include <system_error>
 

src/OutputByOrbit.cc

 #include "OutputByOrbit.h"
 
-#include <stdio.h>
-
+#include <cstdio>
 #include <fstream>
 #include <iostream>
 #include <string>

src/OutputByOrbit.h

 #ifndef OUTPUTBYORBIT_H
 #define OUTPUTBYORBIT_H
 
-#include <stdint.h>
 #include <tbb/pipeline.h>
 
+#include <cstdint>
 #include <cstdio>
 #include <string>
 

src/OutputBySize.cc

 #include "OutputBySize.h"
 
-#include <stdio.h>
-
+#include <cstdio>
 #include <fstream>
 #include <iostream>
 #include <string>

src/OutputBySize.h

 #ifndef OUTPUTBYSIZE_H
 #define OUTPUTBYSIZE_H
 
-#include <stdint.h>
 #include <tbb/pipeline.h>
 
+#include <cstdint>
 #include <cstdio>
 #include <string>
 

src/bril_histo.h

 #ifndef BRIL_HISTO_H
 #define BRIL_HISTO_H
 
+#include <tbb/pipeline.h>
+
 #include <atomic>
 #include <fstream>
 #include <iostream>
@@ -10,7 +12,6 @@
 #include <vector>
 
 #include "controls.h"
-#include <tbb/pipeline.h>
 
 template <typename T>
 class BrilHistoQueue {

src/config.h

 #ifndef CONFIG_H
 #define CONFIG_H
 
-#include <stdint.h>
-
 #include <boost/lexical_cast.hpp>
+#include <cstdint>
 #include <map>
 #include <stdexcept>
 #include <string>

src/controls.h

 #ifndef CONTROLS_H
 #define CONTROLS_H
-#include <stdint.h>
-
 #include <atomic>
+#include <cstdint>
 #include <string>
 
 struct ctrl {

src/format.h

 #ifndef FORMAT_H
 #define FORMAT_H
 
-#include <math.h>
-#include <stdint.h>
+#include <cmath>
+#include <cstdint>
 
 struct blockCalo {
   uint32_t calo0[8];

src/slice.h

 #ifndef SLICE_H
 #define SLICE_H
 
-#include <stdint.h>
-
 #include <tbb/concurrent_queue.h>
 #include <tbb/scalable_allocator.h>
 
+#include <cstdint>
+
 //! Holds a slice of data.
 class Slice {
   //! Pointer to one past last filled byte in sequence

src/tools.h

@@ -6,10 +6,10 @@
  */
 
 #include <curl/curl.h>
-#include <limits.h>
 #include <sys/stat.h>
 #include <unistd.h>  // TODO: This could eventually be replaced by chrono and thread when we move to a more modern C++ compiler.
 
+#include <climits>
 #include <cstring>
 #include <iostream>
 

src/wzdma/wz-xdma-ioctl.h

 #ifndef WZ_XDMA_IOCTL_H
 #define WZ_XDMA_IOCTL_H 1
 
+#include <stdint.h>
 #include <sys/types.h>
 #include <unistd.h>
+
 #include "wz-xdma-consts.h"
-#include "stdint.h"
 
 // Structures used to notify the application about the received block of data
 // The block always starts at the first descriptor, and may and in the middle