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Move clock domain crossing to aligner

Hannes Sakulin requested to merge hsakulin/scouting-preprocessor:clock_domain_crossing_in_aligner into master
  • Everything downstream of aligner runs on stable axi_clk
  • Adds frequency counter for input clock
  • Adds monitoring of orbit length (after zs) and of reset logic in aligner (wait_orbit_end)

Successfully used in 2018 HI setup runs in ADJUST

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