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Remove CWD from the JAR path

Philip Elson requested to merge pelson/cmmnbuild-dep-manager:remove_cwd_from_jar_path into master

Adding the CWD to the JAR search path breaks environment isolation, and is no longer supported. To restore this functionality add extra_jars=(os.getcwd(),) to the Manager.start_jpype_jvm() or Manager.class_path() method calls.

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