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WIP: Fix file handling

Michael Daas requested to merge fix_file_handling into development

This MR fixes some bugs and brings several enhancements according to output file handling. A new output folder structure was implemented, creating a subdirectory in the output_data directory for each chip ID. Output files now have a run number instead of a timestamp in the file name. Scans now load the configuration of the previous scan by default. If there is no previous run in the output directory, a default configuration defined in /scans/configuration.yaml is used.

Edited by David-Leon Pohl

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