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Fixing bug in commit script [skip modfiles]

Spyros Argyropoulos requested to merge fixCommitScript into master

The script cd's in the directory that the user asks to commmit files from, so the */* in front of the directory contents in the checkWhiteList function were wrong.

I also changed the

for i in `ls`


for i in *

otherwise the files were not passed correctly to the function.

Also removed the cvmfs from README since it should be clear that the users should run the script from the repo, not the one on cvmfs, which at certain time points might be different.

This needs to be merged for @spalazzo to continue the testing

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