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ATR-29198: Fix athenaHLT crashes when processing several input files with --skip-events

Oleg Kuprash requested to merge okuprash/HLTMPPU:fix_skip_events into master

Fix issue that prevents HLT reprocessings from running with several input files per athenaHLT.py job.
The crash was occuring when switching between input files due to mismatch between m_currEventInFile and the actual position within file after getEventFromFile.

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