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Follow up !21424 - fixes to upgrade test reference and GenerateMenuMT.py

Tim Martin requested to merge tamartin/athena:MTFixes into master

Update RunMenuTest.ref with new naming convention including L1 item. Fix python typo in GenerateMenuMT.py

Issue was missed due to !21424 (merged) not touching TrigUpgradeTest (and hence not triggering unit test CI)

Marking urgent as blocks trigger dev

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