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Extend AthConfigFlags.fillFromArgs

Walter Lampl requested to merge wlampl/athena:extendfillFromArgs into master

AthConfigFlags.fillFromArgs: Extend to accept the following athena.py-like arguments: --debug --maxEvt --skipEvents --filesInput --loglevel

A stepping stone towards a CA command-line interface and transform-integration

Depends on !32970 (merged)

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