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21.9: Update RD53B encoding tool to proper quad module description

Noemi Calace requested to merge ncalace/athena:21.9-update-rd53b-encoding into 21.9

This MR includes the changes needed to adapt to the proper description of quad modules (!33354 (merged)).

It includes as well a fix to the PixelDesignBuilder, where the total number of rows are used to construct the PixelModuleDesign instead of the number of rows per chip.

FYI: @nstyles, @tlari, @tstreble, @tidreyer

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