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Vkalvrt :Remove ParticleBase methods. Tidy-up a bit the headers

Continue cleanup

  • Remove deprecated ParticleBase* methods
  • Tidy up a bit headers
  • There were a few codes using basically depracated Run-I EDM in interfaces

Mentioning @vkost and @schaffer

This is a bit of extensive clean up and furhter "pruning" might be needed. Will need to finish my 1st on Vertex packages

Edited by Christos Anastopoulos

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