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AMC recovery added in configuration step

Camilla Galloni requested to merge feature/recovery-amc into develop

Description

This MR targets the possibility to recover the AMC during the configuration step, instead of the manual procedure with recover.sh.

Related Issue

Ralated issue: #108 (closed)

How Has This Been Tested?

It has been tested on the coffin setup, even though the throwing of a non vital exception had to be commented out because one of the the OH Tx laser might be faulty and would crash a run. Such an occurrance is not expected in p5.

Types of changes

  • Bug fix (non-breaking change which fixes an issue)
  • New feature (non-breaking change which adds functionality)
  • Breaking change (fix or feature that would cause existing functionality to change)

Checklist:

  • My code follows the code style of this project.
  • My change requires a change to the documentation.
  • I have updated the documentation accordingly.
  • I have read the CONTRIBUTING document.
  • I have added tests to cover my changes.
  • All new and existing tests passed.

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